marsilea.Deformation

class Deformation(data)

Bases: object

A helper class to handle data

1. Split the data based on index

2. Reorder the data based on label order

3. Reorder the data based on cluster order

4. Compute the ratio to split axes that match with data

cluster_col()

cluster_row()

col_breakpoints

Forward Deformation.<row|col>_<name> to its per-axis state.

col_chunk_index

Forward Deformation.<row|col>_<name> to its per-axis state.

col_cluster_kws

Forward Deformation.<row|col>_<name> to its per-axis state.

col_dendrogram

Forward Deformation.<row|col>_<name> to its per-axis state.

col_linkage

Forward Deformation.<row|col>_<name> to its per-axis state.

col_meta_linkage

Forward Deformation.<row|col>_<name> to its per-axis state.

property col_ratios

col_reorder_index

Forward Deformation.<row|col>_<name> to its per-axis state.

col_split_order

Forward Deformation.<row|col>_<name> to its per-axis state.

data_col_reindex

Forward Deformation.<row|col>_<name> to its per-axis state.

data_row_reindex

Forward Deformation.<row|col>_<name> to its per-axis state.

get_col_dendrogram()

get_col_linkage()

get_data()

get_row_dendrogram()

get_row_linkage()

property is_cluster

is_col_cluster

Forward Deformation.<row|col>_<name> to its per-axis state.

is_col_split

Forward Deformation.<row|col>_<name> to its per-axis state.

is_row_cluster

Forward Deformation.<row|col>_<name> to its per-axis state.

is_row_split

Forward Deformation.<row|col>_<name> to its per-axis state.

property is_split

reorder_by_col(data, split='2d')

reorder_by_row(data, split='2d')

row_breakpoints

Forward Deformation.<row|col>_<name> to its per-axis state.

row_chunk_index

Forward Deformation.<row|col>_<name> to its per-axis state.

row_cluster_kws

Forward Deformation.<row|col>_<name> to its per-axis state.

row_dendrogram

Forward Deformation.<row|col>_<name> to its per-axis state.

row_linkage

Forward Deformation.<row|col>_<name> to its per-axis state.

row_meta_linkage

Forward Deformation.<row|col>_<name> to its per-axis state.

property row_ratios

row_reorder_index

Forward Deformation.<row|col>_<name> to its per-axis state.

row_split_order

Forward Deformation.<row|col>_<name> to its per-axis state.

set_cluster(col=None, row=None, use_meta=True, linkage=None, meta_linkage=None, **kwargs)

set_col_chunk_order(order)

set_data(data)

set_data_col_reindex(reindex)

set_data_row_reindex(reindex)

set_row_chunk_order(order)

set_split_col(breakpoints=None, order=None)

set_split_row(breakpoints=None, order=None)

split_by_col(data)

split_by_row(data)

split_cross(data)

transform(data)

data must be 2d array with the same shape as cluster data

transform_col(data)

Deform data whose last axis indexes columns.

transform_row(data)

Deform data whose last axis indexes rows.